The guys at Circe Cycles have been sharing details of the "Green Commute Initiative" (GCI) who are doing the Cycle to Work scheme without the £1000 limit (because they are also registered with the Financial Conduct Authority).
Green Commute Initiative wrote:Green Commute Initiative is a Social Enterprise with a vision to get commuters out of cars and onto any kind of bike, with the dual purpose of improving both the individual’s health and wellbeing, as well as reducing the environmental impact of pollution and congestion from cars. We do this through our cycle to work scheme.
They seem to have a good spread of places across the UK that will use GCI, including places (that I know of) that do more practical bikes - such as Circe & Practical Cycles (up in Blackpool).